Documentation

System Documentation

Schema Documentation
The table and column documentation for the Public ImmPort Schema are available here.

Data Model Viewer is available here.

Entity-Relationship diagrams are available here.

Requirements and Design
The System Architecture and Software Design Specification (SASDS) v.5.0 defines the overall architecture and software design for the ImmPort system as of March 2016. The SASDS addresses hardware, software, and database design.

Functional Requirements
The Functional Requirements defines the function of the Administrative section for the ImmPort system which includes creating, updating, sorting and deleting a program, contract grant and user.

Documentation

BISC De-identification Process
Download a copy of the BISC De-identification Process .

Request Genotyping data
Download a Powerpoint describing the Genotyping Data Request Process .
Download the Genotyping Data Request form .

Software Release Notes
View software release notes for the current version of ImmPort and past releases View

Data Release Notes
View data release notes for current and past releases. View

Scientific Guidelines
HLA Documentation and Analysis Methods Manuals

HLA Quality Control Pipeline Specifications

Haplotype Estimation and Linkage Disequilibrium Methods Manual

HLA Disease Associations Methods Manual Version 0.1.0 (July 25, 2011)

Proposal for HLA Data Validation

Hardy-Weinberg Proportions Methods Manual: Testing fit of genotype frequencies to Hardy-Weinberg proportions

Genotype SNP Imputation Methods Manual

T1DGC Immunochip HLA Reference Panel for Imputation with SNP2HLA